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ICARDA's Research
Portfolio
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| ICARDA's Research Portfolio>Projec3.1>Project3.2>Project3.3>Project3.4 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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ICARDA's Research Portfolio |
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Theme 3.
Natural Resource Management
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Project 3.3 Agrobiodiversity Collection and Conservation for Sustainable
Utilization
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Further progress in collecting, documenting, and conserving plant genetic resources was made by ICARDA in 2002, and the Center's germplasm collection continued to grow. Studies of ICARDA's wild barley core collection, the genus Aegilops and the six closely related taxa of the Vicia sativa aggregate, yielded new insights into the genetic diversity of these groups. Germplasm was characterized and multiplied, and more than 16,000 samples dispatched to users in 28 countries. In West Asia, the promotion of in situ conservation and sustainable use of dryland agrobiodiversity continued in Jordan, Lebanon, Palestine and Syria. In CAC, a regional genetic resource network instituted in 1999 was further strengthened, to promote the conservation of the region's genetic resources. Allied to this was the updating of related facilities, and the provision of capacity-building training. Progress was also made in providing an internet-based inventory of barley genetic resources throughout the world. Seed health testing continued, and a number of ICARDA's genebank accessions were cleaned of seed-borne viruses. |
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Germplasm
Collection In 2002, ICARDA's germplasm collections grew by 1331 new accessions, to reach a total of 128,462. A unique set of 692 accessions resulted from plant collection missions to Jordan, Romania, Syria and Turkmenistan (Table 25). Most valuable were 585 unique accessions of barley and bread wheat, originating from the germplasm collections of Vavilov and his colleagues in 1920s and 1930s and donated by the Vavilov Institute (VIR), St Petersburg, Russia. |
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| Table 25. Number of accessions collected in missions to Jordan, Romania, Syria and Turkmenistan. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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The GEF/UNDP Dryland Agrobiodiversity Project conducted a one-week collection
mission in Jordan by researchers from ICARDA and the National Center for
Agricultural Research and Technology Transfer (NCARTT), Jordan. The mission,
to collect wild relatives and landraces of cereals, forage legumes and
pasture species, targeted the central and northern provinces of Jordan.
A total of 374 accessions were collected (102 cereals, 40 forage legumes
and 232 pasture species). ICARDA organized a collection mission in Romania, in |
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![]() Collecting forage legumes in mountainous areas in Romania. |
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with the Suceava Gene Bank, Romania, and VIR. The mission was conducted
with support from Australian donor projects (the Australian Center for
International Agricultural Research-ACIAR, and the Grain Research and
Development Corporation-GRDC). Its main objectives were to survey, collect
and conserve the genetic diversity of crops in isolated areas of the west
Transylvanian Plateau. In the areas where collection was undertaken, farming
occurs on a small scale due to the topography of the plateau, which is
characterized by high mountains covered by dense forest. Therefore, landraces
of wheat, barley, and other crops have persisted in the region. Fifty-two
sites were visited and more than 2500 km were covered by the collecting
team. Collection focused on isolated areas on the plateau and priority
was given to cereals and legumes; but, other crops were also collected.
Altogether, 300 population samples were collected from different crops
of interest to the three mission parties. Cereal landraces and their wild relatives were also collected in northeastern Syria in June 2002, while another mission collected food and forage legumes in northeastern and southern Syria. ICARDA and ARC Douma, Syria, participated in these missions, which collected a total of 88 accessions. From 25 May to 15 June 2002, a collaborative plant collection mission was undertaken in Turkmenistan, involving the Turkmenistan Garry Gala Research Institute for Plant Genetic Resources, VIR, ICARDA, USDA and Agriculture Western Australia. The mission was supported by Australian donor projects (ACIAR and GRDC), and covered the territory from the Caspian Sea to the west of Ashgabat, as well as to the east along the Afghan border. A total of 413 accessions, belonging to 106 species, were collected from 48 sites. |
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Molecular analysis of ICARDA's wild barley core collection Out of the total of 1679 accessions of barley's wild progenitor (Hordeum vulgare subsp. spontaneum), held at ICARDA, a core collection was established, consisting of 150 accessions originating from 17 countries. The genetic diversity of the core collection was studied using AFLP (amplified fragment length polymorphism) molecular markers. Accessions were grouped by origin into 22 geographic sub-regions, and the total genetic variation of the samples was partitioned by analysis of molecular variance (AMOVA). Twenty-three percent of the total variance was among the geographic groups, while most of the variance (77%) occurred within the groups. Discriminant analysis showed a well-defined geographic pattern of genetic diversity in wild barley, as 94% of the original |
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![]() Fig. 15. Dendrogram for sub-regions of wild barley origin based on UPGMA hierarchical cluster analysis of AFLP marker data. |
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cases were correctly classified and, in the 17 sub-regions, all the accessions
were properly allocated. The genetic distance matrix (Euclidean squared
distances) was computed from canonical discriminant functions evaluated
at group means; hierarchical cluster analysis (UPGMA) was performed using
the SPSS software package (Fig. 15). Accessions from southern Jordan and Palestine were found to be genetically distant from the wild barley collected in Syria and northern Jordan, while geographically remote germplasm accessions from the Central and West Asia sub-region (Pakistan, Afghanistan and Tajikistan) and from Libya were found to be relatively closely related to accessions from western Syria, northern and central Jordan, Iraq and southern Iran. This indicates that wild barley spread outwards from the nuclear Near East area with cultivated cereals, moving eastward along the 'Silk Road' and westward to Libya by sea. Accessions from Jordan and Syria were found to be more diverse than those from Iran, Central Asia and Turkey. The results of this study suggest that the genetic variation found in the ICARDA H. spontaneum core collection is geographically structured, with a major part of that diversity being found within the geographical sub-regions. |
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diversity and phylogenetic relationship of diploid Aegilops species
Wild relatives of wheat, including Aegilops species, are a valuable source of genes for stress tolerance and adaptation to harsh environments. To better understand relationships among the species, the genetic diversity of the genus Aegilops was evaluated and its phylogeny studied. To this end, the genetic variation of diploid Aegilops species was investigated using the AFLP technique. Four primer combinations were used to analyze intraspecific genetic diversity, while 15 primer combinations were used to analyze interspecific phylogenetic relationships. Genetic diversity within the Aegilops species was categorized into three classes based on the level of diversity found: i.e. the highly variable species (Ae. speltoides and Ae. mutica, syn. Amblyopyrum muticum), species with a medium level of variation (Ae. umbellulata, Ae. caudata, Ae. bicornis and |
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![]() Fig. 16. Phylogenetic tree of diploid Aegilops species based on AFLP marker analysis. |
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| Ae. searsii) and species with a low level of variation (Ae. tauschii). In general, geographical relationships among populations were detected for each species. With respect to the interspecific phylogenetic relationships, three Sitopsis species (Ae. bicornis, Ae. searsii and Ae. speltoides) were found to form a cluster. The C and U genome species (Ae. caudata and Ae. umbellulata) formed another cluster in the phylogenetic trees (Fig. 16). These results are more consistent with results obtained from cytological genome analysis than they are with those obtained by molecular plasmon analysis, suggesting that the nuclear genomes have evolved differently from the cytoplasmic genomes in the genus Aegilops. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Patterns of genetic and taxon diversity in the Vicia sativa aggregate Common vetch (Vicia sativa ) is an important forage legume, not only in the CWANA region, but also in other parts of world. Therefore, ICARDA researchers used AFLPs to study the geographic distribution of genetic diversity in the Vicia sativa aggregate, a complex of six closely related taxa. The study demonstrated that the center of diversity for the aggregate is located in the Mediterranean (Fig. 17). The highest level of diversity and a relatively high concentration of rare alleles were found in the South Mediterranean floristic province, in the north of Tunisia in particular. The East Mediterranean floristic province was also found to have a high level of diversity. A genetic bottleneck was observed in South Asia, with low diversity and no rare alleles being found east of Iraq. A significant |
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![]() Fig. 17. Geographical diversity in Vicia aggregate. |
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correlation was found between the number of subspecies present in an area and the average diversity within the subspecies. This indicates that, for the Vicia sativa aggregate, the number of subspecies in a region can be used as a predictor for genetic diversity levels. Germplasm multiplication, characterization and utilization In the 2001/02 growing season, a total of 2500 accessions were characterized using 15 to 30 descriptors. A representative set of barley, wheat, lentil, chickpea, pea and faba bean landrace accessions from Afghanistan (271 in total) was selected from ICARDA's genebank. These were multiplied in large plots in the field, and characterized for a number of agro-morphological characters. Priority was given to seed multiplication to replenish seed stocks, since demand for germplasm from ICARDA's genebank has further increased in 2002. A total of 16,300 seed samples were dispatched, on request, to external users in 28 countries. This included the repatriation of indigenous germplasm to Afghanistan, Jordan and Palestine, a total of 271, 1350 and 1000 accessions, respectively. An additional 4700 seed samples were distributed to breeders and scientists within ICARDA. Community-based agrobiodiversity conservation in West Asia ICARDA's project for the
conservation and sustainable use of dryland agrobiodiversity is funded
by the Global Environment Facility (GEF), through the United Nations
Development Program (UNDP). It aims to promote community-driven in situ
conservation and sustainable use of dryland agrobiodiversity in Jordan,
Lebanon, Palestine and Syria. ICARDA is responsible for regional coordination
and networking among the national components and provides, in cooperation
with the International Plant Genetic Resources Institute (IPGRI) and
the Arab Center for the Studies of Arid Zones and Dry Lands (ACSAD),
necessary technical backstopping and training. |
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Through eco-geographic surveys and the use of GIS/RS technologies, the
project demonstrated that the main factor affecting the diversity and
abundance of wild relatives of fruit trees is natural habitat destruction
resulting from the reclamation of agricultural land in mountains and rangeland.
The respective acreages of crop and fruit tree landraces are mainly being
reduced by the spread of, and replacement with, apple, cherry and olive
plantations using introduced new varieties. The project documented the
failure of these plantations in some project sites, and recommended that
extension services consider any long-term economic benefits before switching
to new, introduced species. The project has demonstrated the value of water-harvesting techniques for rangeland rehabilitation, and the value of seed treatment and cleaning in increasing the grain yields of cereals and legumes. In collaboration with local communities of herders, the best options for improved management of rangelands have been developed and will be tested on a large scale. In its efforts to advise male and female collaborating farmers on alternative sources of income, the project has provided a total of 23 training courses and 21 farmer workshops on food processing, the development of apiculture and honey production and the cultivation of medicinal plants. A successful eco-tourism experience |
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was also organized, in collaboration
with the private sector in Lebanon and the local community of Ham. Additionally,
a permanent agrobiodiversity store was created at Al-Haffa (Syria) and
a weekly market organized at Ajloun (Jordan), both of which will allow
local communities to sell products derived from their local agrobiodiversity.
the organization of agrobiodiversity fairs in Jordan, Lebanon and Syria;
The project is currently contributing to the development of different
national policies and legislation. With the help of an FAO expert, the
Syrian Component of the project has drafted legislation regarding access
to and exchange of genetic resources. The Jordanian and Lebanese Components
have contacted the FAO, in order to achieve the goal in their respective
countries. The Regional Component organized the first Arab workshop
on "The Implications of International Agreements on the Development
of National Policies and Legislations Related to Biodiversity Conservation."
This was conducted in collaboration with ACSAD, ICARDA, IPGRI, UNEP's
Regional Office for West Asia, FAO, and the Arab Organization for Agricultural
Development. The workshop was held at the Arab League headquarters in
Cairo in May 2002. It was attended by guest speakers, and more than
55 participants representing the governments of Egypt, Saudi Arabia,
Oman, Sudan, Lebanon, Syria, Palestine and Iraq, and the GEF-UNDP projects
in Morocco, Tunisia and Algeria. Important recommendations were made
to the Arab League by participants whose aim is the better coordination
of efforts to conserve biodiversity in the Arab world. Plant
Genetic Resources in Central Asia and the Caucasus The CAC region is rich in
plant diversity. Many of the world's economically important domesticated
crop species originated in the area. Thus, besides the landrace material
native to the area, it also contains many of the progenitors and wild
relatives of these domesticated species, which contain unique combinations
of potentially useful genes. Conserving
plant genetic resources: a new regional network Due to financial constraints,
the region's national genetic resource institutes' links with other
research institutes have become weak. The national institutes' abilities
to collect, conserve, and document local and exotic genetic resources
needed to be enhanced, to allow them to secure germplasm for national
breeding programs. Therefore, in 1999, the Central Asia and Transcaucasia
Network on Plant Genetic Resources (CATCN PGR) was established, involving
all eight CAC countries. Within this network, eight PGR units were established
to focus on field crops in the region. ICARDA supported the training
of PGR documentation specialists, and provided the eight units with
computers, so that they could produce inventories and documentation
concerned with the PGR in their countries. In addition, to highlight
the aims and achievements of the ACIAR-funded PGR-CAC project, raise
awareness of the importance of PGR work in the region and act as a networking
and information sharing device, an Internet website was developed in
2002. |
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New
facilities, new opportunities Great improvements in PGR
facilities have recently been made in CAC: in 2002, an upgraded genebank,
and three genetic resource centers were inaugurated. At the request
of Uzbek PGR scientists, and in collaboration with the Ministry of Agriculture
and Water Management of Uzbekistan, ICARDA, IPGRI and USDA jointly upgraded
the Uzbek genebank facility at the Uzbek Research Institute of Plant
Industry (UzRIPI) in Uzbekistan. This medium-term storage facility could
serve as a genebank for the whole region, and will allow seed quality
to be conserved for 10-15 years. Thus, replanting of stored accessions
can now be undertaken every 10-15 years, rather than every 2-3 years. |
![]() Prof. Dr Adel El-Beltagy (second from left), ICARDA Director General, inaugurated a new genetic resources center in Tajikistan. Present on the occasion were, from left, Dr C. Buhariev, Director of the Crop Husbandry institute; Acad. Bobo Sanginov, President of the Tajik Academy of Agricultural Sciences; Dr Raj Paroda, ICARDA-CAC Regional Coordinator; Dr Mohan Saxena, ICARDA Assistant Director General; and Dr Jan Konopka, ICARDA Germplasm Documentation Officer. |
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This type of ICARDA-supported
PGR activity in the area has led to the inauguration of Plant Genetic
Resource Centers in each of the above countries. Training and human capacity building A regional training and coordination
workshop for Plant Genetic Resource Units was held in Tashkent in April
2002. Organized by the CGIAR Program Facilitation Unit and GRU-ICARDA,
the meeting was attended by 24 scientists from the eight CAC countries.
The meeting assessed the progress made by the units over the last 12
months, discussed solutions to operational problems, and gave training
on updating the database system to document ex situ collections, and
in using e-mail. Global
inventory of barley genetic resources The FAO estimates that more
than 300,000 accessions of barley are conserved in numerous ex situ
collections. There is no doubt that there is a significant overlap between
these collections, but the extent of tshis overlap is unknown. What
is more, although some collections can be accessed via the Internet,
differences in separate systems, both in the format of the data and
in the interfaces offered, prevent users from efficiently accessing
information on conserved material. During 2002, ICARDA began a collaborative
project (involving organizations with large collections of barley) which
aims to compile a Global Inventory of Barley Genetic Resources. |
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| Table 26. Major holders of barley germplasm collect-ions included in the inventory. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Probably the most important part of any 'global collection' is the material
collected in the field: approximately 40% of conserved material can be
attributed to efforts of collectors. Based on available data, the project
identified over 280 collecting missions conducted during the period 1921-2001
in 57 countries. Unfortunately, there still exist many accessions for
which the information concerning collectors and/or collection dates is
untraceable. The project places great emphasis on the geo-referencing
of collection sites, and the database can map out over 9,000 sites. However,
the majority of conserved material is the result of breeding efforts,
and the project aims to standardize the names of accessions by correcting
misspellings, ensuring consistent transliteration into Latin, consolidating
synonyms, etc. The standardization of names will allow the collections
to be cross-referenced and will facilitate searching of the database.
Currently the system registers approximately 49,900 names, associated with over 83,200 accessions. For cultivars and breeding lines, the database compiles information on pedigree, developer and date of release. The inventory will be published on the Internet in 2003. Seed
health testing During 2002, approximately
12,000 incoming, and 18,000 outgoing seed samples were tested at the
Seed Health Lab (SHL). This volume of seed constituted 15 shipments
imported from 13 countries and 270 shipments exported to 94 different
countries worldwide. Tilletia controversa was the most frequently found
quarantine pathogen, contaminating incoming bread wheat seeds. The percentage
contamination in shipments varied, reaching up to 38% (in seed from
Turkey) and 100% (in seed from Russia). Cleaning
seed-borne viruses from ICARDA genebank accessions Fifty-eight lentil accessions, planted in the field for multiplication (1000 plants per accession), were tested in ICARDA's Virology Laboratory for the presence of seed-borne virus infection. This effort was intended to eliminate all infected plants during the late flowering stage (April-May), and only seeds from healthy plants were harvested and stored. A total of 2180 accessions of barley seed were tested for the presence of Barley Stripe Mosaic Virus (BSMV): 233 accessions were found to be infected. The virus-free accessions will be stored in the genebank, and accessions with virus-infected seeds will be cleaned. Seed-borne virus testing for international nurseries About 183 faba bean accessions (100 seeds per accession) were tested in ICARDA's Virology Lab for the presence of Broad Bean Stain Virus (BBSV), Bean Yellow Mosaic Virus (BYMV) and Pea Seed-borne Mosaic Virus (PSbMV). Fifty accessions were found to be infected with a seed-borne virus. A total of 383 lentil accessions were evaluated in the field by testing fresh leaf samples (400 plants per accession) for the presence of seed-borne virus infection: 217 accessions were found to be virus-free. In addition, seed samples from 286 lentil accessions (400 seeds per accession) were tested, during August, for the presence of seed-borne viruses. Of these, 132 accessions were found to contain one or more seed-borne infections and were disqualified from being dispatched. |
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