ICARDA's Research Portfolio


ICARDA's Research Portfolio

Theme 1. Crop Germplasm Enhancement
Project 1.5. Food Legume (Lentil, Kabuli Chickpea, and Faba Bean) Germplasm
  Improvement for Increased Systems Productivity
   
 

Chickpea, lentil, and faba bean are important food crops in CWANA. In addition to providing a major source of dietary protein (particularly for the poor), they play an important role in maintaining and improving soil fertility. In 2002, high-yielding, cold-tolerant varieties of chickpea were developed. Resistant to ascochyta blight, these varieties are suitable for winter planting. Researchers also identified ways to improve the efficiency of statistical analyses of variety trials, and conducted the first study of pathotype-specific resistance to ascochyta blight. Lentil research concentrated on producing winter-hardy varieties for use in the highlands. Lentil cultivars suitable for introduction into the CAC region and new lentil lines with combined resistance to a number of viruses were identified. Progress was made in improving the nutritional value of faba bean, by breeding new lines which contain low levels of an anti-nutritional factor and are resistant to ascochyta blight and chocolate spot disease. Finally, work on developing faba bean resistance to the parasitic weed Orobanche is in progress.

Two new chickpea varieties released in Syria

Chickpea is one of the most important cool-season food legumes grown in Syria, occupying about 90,000 hectares annually. It is traditionally grown in the spring (from mid-February to mid-March) using conserved soil moisture, which gives an average productivity of 670 kg/ha. However, the local, spring-grown landraces are susceptible to ascochyta blight-a devastating fungal disease which can cause serious damage if conditions favor the disease's development. Terminal drought can also cause serious yield losses and, sometimes, even near-total crop failure, as the crop is mainly rainfed. In Syria, late rains in the last three years (1999/00 to 2002/03) have favored disease development. This has caused serious losses in Syria's spring-sown crop, further highlighting the need for ascochyta-blight-resistant lines which would ensure successful chickpea crops.
     In a cooperative effort, the Ministry of Agriculture in Syria (MOA) and ICARDA's researchers have clearly demonstrated that chickpea can make most efficient use of available water if grown earlier in the winter, producing almost double than the spring-sown crop. However, for winter-sown chickpea to be successful, the cultivars must be ascochyta-blight resistant and cold tolerant, traits not found in the traditional spring-sown chickpeas grown by farmers. To address this, a large number of cultivars were developed at ICARDA, and evaluated at various locations in Syria in collaboration with the MOA. Improved materials were identified as being both ascochyta-blight resistant and cold tolerant. Three winter-sown varieties ('Ghab 1', 'Ghab 2', and 'Ghab 3') were released (prior to 2002) by the MOA for cultivation in different areas in Syria.

     One of the varieties ('Ghab 3') is both high yielding and more resistant to ascochyta blight than are local landraces. However, the seeds it produces are smaller. In the absence of an alternative, this variety is currently being grown by farmers. However, efforts are being made to address farmers' demand for larger seeds. Some new materials, which produce larger seeds than the three previously released varieties, have been developed at ICARDA. These were also jointly evaluated in Syria, using multilocation trials. Two improved cultivars (FLIP 93-93C and FLIP 88-85C) were identified and tested against 'Ghab 3' in two different on-farm evaluations in Syria. FLIP 88-85C produced a mean seed yield of 1603 kg/ha (Table 6)-3.8% more, overall, than the yield of 'Ghab 3' (the check variety).


H.E. Dr Noureddin Mona (center), Syrian Minister of Agriculture, visits a farmer's field near Aleppo in the company of ICARDA researchers and Syrian farmers and researchers, where a susceptible local chickpea variety was devastated by ascochyta blight. .

Although FLIP 88-85C exhibited little superiority over 'Ghab 3' in terms of seed yield and tolerance to ascochyta blight, it produced much larger seeds (35 g/100 seeds, compared with 29 g/100 seeds). This new cultivar (developed at ICARDA from a cross between ILC 629 and FLIP 82-144C) has recently been released for general cultivation in Zones 1* and 2* (except Malkieh) in Syria under the name 'Ghab 5.'
     In another trial, FLIP 93-93C gave an average seed yield of 1792 kg/ha, 13.4% more than 'Ghab 3.' FLIP 93-93C also produced larger seeds (35.5g/100 seeds) and taller plants than 'Ghab 3,' and was more resistant to ascochyta blight. As a result, FLIP 93-93C was released by the MOA in Syria under the name 'Ghab 4' for general cultivation in Zone 1 and Zone 2 (except Malkieh). 'Ghab 4' was developed at ICARDA from the cross (FLIP 85-122C xFLIP 82-150C) x FLIP 86-77C.

Zone 1: Rainfall between 350-600 mm and not less than 300 in 2 years out of 3
Zone 2: Rainfall between 250-350 mm and not less than 250 in 2 years out of 2
Table 6. Performance of two new cultivars, FLIP 88-85C and FLIP 93-93C against the improved variety 'Ghab 3' in Syria.
Seed yield (kg/ha)
Cultivars
1994/ 95
1995/96
1996/97
1998/99
1999/00
2000/01
2001/02
Mean
FLIP 88-85C
2693
1701
2137
898
1296
1065
1432
1603
'Ghab 3'
2420
1682
1964
837
1402
  991
1514
1544
No. of locations
   14
   12
   13
   5
     6
    6
    6
 
1997/98
1998/99
1999/00
2000/01
2000/01
2001/02
Mean
 
   
setI
setII
   
FLIP 93-93C  
2166
2202
1941
1364
1429
1647
1792
'Ghab 3'  
2121
1883
1823
1145
  991
1514
1580
No. of locations
   15
   10
   14
     4
    6
     6
  
     The General Organization of Seed Multiplication (GOSM) is multiplying the seed of the two new varieties ('Ghab 4' and 'Ghab 5') for distribution to farmers. It is expected that 'Ghab 4' and 'Ghab 5' will be used by farmers in Syria very soon, as they produce larger seeds than those previously released, and are suitable for mechanical harvesting. Moreover, when these varieties are sown in winter, the crop can be harvested at least 2-3 weeks earlier than the traditional spring-sown crop. This will help farmers avoid the losses caused by terminal drought, which is becoming a common phenomenon due to global warming.
A new high-yielding and ascochyta blight tolerant kabuli chickpea variety, jointly developed by ICARDA and Syrian researchers, being demonstrated at El Ghab Research Station, Aleppo, by the Station Director to Syrian farmers on a Field Day.
Genetic dissection of pathotype-specific resistance to ascochyta blight disease in chickpea

Ascochyta blight is an economically important disease of chickpea, caused by the fungus Ascochyta rabiei. Although the fungus shows considerable variation in its pathogenicity, the genetics of pathotype-specific resistance has not previously been studied in this plant-pathosystem. The chickpea landrace ILC 3279 is resistant to pathotypes I and II of the pathogen. In order to understand the inheritance of pathotype-specific resistance in chickpea, both Mendelian and quantitative trait loci analyses were performed using microsatellite markers and a set of intraspecific, recombinant inbred lines derived from a cross between the susceptible accession ILC 1272 and the resistant accession ILC 3279. Researchers identified and mapped a major locus on linkage group 2, which confers resistance to pathotype I. Two independent recessive major loci were also mapped on linkage groups 2 and 4, with complementary gene action conferring resistance to pathotype II. Of two pathotype II specific resistance loci, one was linked very closely with the pathotype I specific resistance locus, indicating clustering of resistance genes in that region of the chickpea genome.

Modeling spatial variability in chickpea trials

Chickpea yield trials are normally conducted using complete or incomplete block designs. Although carefully constructed block designs do control experimental error resulting from soil variability in field trials, considerable variability may still remain and can lead to biased estimates of the performances of the cultivars being evaluated. Spatial models have been found to be useful in terms of accounting for such variability in field trials of some crop plants. But analyses using various aspects of spatial variability have yet to be implemented in chickpea field-evaluation trials. Therefore, researchers examined the nature of spatial variability in chickpea field trials conducted at ICARDA's main research site at Tel Hadya, Syria.
     Yield data from 39 chickpea trials, 34 of which used lattice designs, and 5 of which used randomized complete block designs (RCBs), were analyzed statistically, using 18 models. These models incorporated a range of spatial features described in terms of block structure, linear trends, and spatial errors. Researchers fitted all these models, selected the model most consistent with the spatial pattern in a given field and compared the efficiency of each selected model with the classical (RCB and lattice) models. The model which best described the data in a trial was used to compare the performance of the different genotypes.

     Of the 34 lattice-design trials, 22 exhibited variable spatial patterns not accounted for by the lattice blocks. Interestingly, no single model was found suitable for all the trials. On average, classical lattice analyses exhibited an efficiency of 128% over RCB analyses (Fig. 7), while the spatial method gave an efficiency of 144%. The study thus indicated that the gain in efficiency based on spatial models increases with the heterogeneity of the experimental field. As examples, the efficiencies of the spatial models and lattices, and the ranking of the genotypes based on the block and the spatial models in two different chickpea trials (conducted during the 1998/99 growing season) are given in Table 7. It is evident that the ranking of the genotypes can change in cases where the spatial model shows a higher level of efficiency than the classical method. Therefore, we recommend that incomplete block layouts should continue to be used when planting chickpea trials, but in analyses, spatial models should be used to detect the presence of spatial variability, if any. The best model that accounts for spatial variability should be identified, and used in the


Fig. 7. Spatial variability patterns as exhibited by 3-dimensional graphs of the residuals from yield data from Trial 2 evaluated using randomized complete block design (left) and the 'best' model -- the lattice design with linear trend, random cubic smoothing spline and first order autoregressive errors in column direction (right). It may be seen that the best model accounts for the features of spatial variation in the field as reflected by the residuals indicating no pattern (right).
analysis, in order to select the best-performing cultivars. This analysis adds value to the data ordinarily collected by making selection for yield more precise.
Table 7. The top 10 of 64 chickpea genotypes (G1 to G64) and their mean seed yields (kg/ha) selected using best spatial model in two trials conducted in 1998/99, and their respective ranks using lattice and RCB models.
a) Trial 1
                     
Genotype
G2
1596
G13
1540
G1
1519
G20
1516
G22
1454
G44
1445
G11
1443
G41
1437
G55
1428
G50
1425
Yield (in kg/ha,using spatial model) Rank (Spatial model:
1
2
3
4
5
6
7
8
9
10
197% efficiency) Rank (Lattice model:
1
2
3
6
4
14
13
18
7
8
103% efficiency) Rank (RCB model)
2
1
4
9
6
13
14
16
5
7
b) Trial 2
Genotype
G64
1106
G15
1083
G13
996
G63
914
G14
880
G29
841
G56
770
G17
748
G47
699
G1
680
Yield (in kg/ha, using spatial model) Rank (Spatial model:
1
2
3
4
5
6
7
8
9
10
297% efficiency) Rank (Lattice model:
1
2
3
4
5
6
7
8
11
13
267% efficiency) Rank (RCB model)
2
1
3
7
4
5
8
6
17
10
Spatial: Randomized complete blocks with linear trend, random cubic spline and first-order autoregressive errors across the 'columns' in the layout of the trials in the field.
Winter Lentils: hope for highland farmers

In West Asia, lentil is traditionally grown in winter in the lowlands (<850 m a.s.l., with temperatures of about -10°C or below) and in spring in the highlands, where winter conditions approaching -25°C are too severe for lentils. In the highlands of Afghanistan, Iran, Pakistan and Turkey, lentil is also normally grown as a spring crop, because of the severe winter cold. In these areas, ICARDA's major aim is to shift lentil production from spring to winter planting, to boost production and increase profits for farmers.
     Research, in collaboration with national programs, has shown that lentil production can be increased significantly by shifting planting from spring (March-April) to early spring (February) or fall (October-November). The crop then benefits from winter rainfall and the fact that any moisture received during that period is less subject to evaporation, because temperatures are lower as the crop approaches maturity. This allows optimum vegetative growth and higher water-use efficiency. It has been estimated that about 400,000 ha of the spring crop could be replaced by winter lentil in the highlands of West Asia.

     One might ask, "If the winter crop is so profitable, why haven't farmers tried growing lentil in winter before?" The answer is that farmers avoid winter sowing, because of heavy or total crop losses due to cold stress, weeds, and blight. ICARDA and the national program researchers have identified three elements essential for a successful winter crop: (1) cultivars which are sufficiently hardy, (2) weed control, and (3) resistance to ascochyta blight.
     The first step in developing cultivars appropriate for winter planting is finding plants that can survive the harsh winter cold. ICARDA has a rich collection of cultigens and

ICARDA and Turkish scientists evaluate the performance of 'Kafkas,' a high-yielding and winter-hardy lentil variety in Turkey.
 
wild relatives (around 10,500). These include a number of collections from cold-prone areas. These accessions are the raw material from which ICARDA is breeding elite lines for winter cultivation.
     In the highlands of central Anatolia, where lentil is grown as a spring crop on about 200,000 ha, mid-winter temperatures vary from -12°C to 30°C. Working with ICARDA, the Central Research Institute for Field Crops (CRIFC) in Ankara, Turkey released a number of winter-hardy varieties for use in the region. Three high-yielding winter-hardy varieties (providing a 30-44% increase over a check variety; Table 8) have recently been added to this number. All appear resistant to ascochyta blight. In addition, CRIFC researchers have identified many winter-hardy lines from ICARDA-supplied nurseries. These are now at various stages of evaluation, and some of them are undergoing advanced testing.
Table 8. Yield and cold-tolerance score of recently released winter-hardy lentil cultivars in Turkey.
Variety
Yield (kg/ha)
Cold-tolerance score*
% increase over local check
'Kafkas'
1705
1
42
'Ciftci'
1558
1
30
'Ozbek'
1730
2
44
Local
1199
7
-
* Scale from 1 to 9, where 1 = most hardy and 9 = highly susceptible.
     Lentil is also an important crop in Iran, where it is grown on about 200,000 ha. However, productivity is poor (464 kg/ha). The major lentil-producing regions in Iran are East Azerbaijan, Ardebil, Khorasan, Zanjan, Ghazvin and Lorestan. In winter, temperatures can drop to -22°C. To date, the only variety released in Iran for early-spring sowing is 'Gachsaran' (ILL 6212), which originated from ICARDA material and has a moderate level of winter-hardiness. Some other winter-hardy lines (such as ILL 590, ILL 662, ILL 857 and ILL 975) are in on-farm trials. These lines have a high level of resistance to cold and fusarium wilt, and are free from ascochyta blight.
     In the highlands of the Balochistan province of Pakistan, lentil is planted in the spring and gives a low yield. To address this, scientists at the Arid Zone Research Center released 'ShirAZ-96,' a line for winter cultivation developed by ICARDA.
     In Afghanistan, two moderately winter-hardy varieties ('ILL 5582' and 'ILL 7180') have been released, for early-spring planting, in the Herat, Balkh, and Takhar provinces. On average, 'ILL 5582' yields 53% higher than the local cultivars, while the average yield of 'ILL 7180' is 37% higher. Seeds of these varieties were supplied to Afghanistan.
     In the Atlas Mountain of North Africa, where a moderate level of winter-hardiness is required in winter crops, newly released varieties are spreading fast. For example, farmers in Morocco have started growing 'Hamria' and 'Bichette' varieties, which are derived from ICARDA-supplied materials.
     Obviously, screening plants for winter-hardiness plays a major role in winter-cultivation development; the fast-growing field of biotechnology has a vital part to play in this. Research has shown that, although sufficient winter-hardiness is available in cultivated lentil germplasm, the genes conferring winter-hardiness must be bred into good lines (those bearing a host of desirable traits). Past progress was slow, due to the difficulties inherent in identifying and transferring winter-hardiness genes using traditional field screening methods. To remedy the problem, ICARDA is working (in collaboration with Washington State University, USA, and CRIFC) to identify and tag, using molecular markers, genes that confer winter-hardiness.
     The inheritance study indicated that winter-hardiness is a quantitative trait controlled by many genes of small effect, with heritability estimates among the populations ranging from 15.9% to 90.7%. A recombinant inbred population was genotyped using AFLP, RAPD and isozyme markers and a genetic linkage map has been developed. The linkage map and phenotypic data used for a quantitative trait locus (QTL) analysis indicated that three QTLs were present, accounting for 33.4% of the phenotypic variation for winter survival. Markers flanking the QTLs are available for use in marker-assisted selection for winter-hardiness in lentil breeding.